Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015911692.1_cds_XP_016461728.1_55023
CDS Infomation

[gene=LOC107785023] [db_xref=GeneID:107785023] [protein=UPF0481 protein At3g47200-like] [protein_id=XP_016461728.1] [location=complement(join(12240..13661,14928..15017,18982..19038))] [gbkey=CDS]
Sequence

ATGGCACAACATATTGAGATTACCCGACTGCTCGATCAAACTCCTCCGAAGGATGAGTCG
CCATCTCGCCCGCAGTTGCTAAGCCCCTCACCCGCTGTTGCTGCTTCCTTCTTCGCCTTT
GTCGTTGCCAGTCATCGAGCTCGAGCGATACAAGAAGGCAGGGAAGCGGATTATGTGATC
GAGATAAAGACAGCAGATGTTCAAAATCCAGTATTTGATGAAGGATTGTCTACCGAATCA
TGTACCATCTTTAAAGTAAATGCGGGACTACATGAATCAAATCCAAATGCGTATAGGCCA
AAGTTGATCTCCATCGGTCCTTACCATAAAAACAATCCGAAACTTCGCTCGATGGAAAAG
TATAAACTGCGTTACCGACAACGGTTTCTCCGCAGGAAAAAGACGATTGATTTGGAAAGT
TGCATTAGAGAATTGGAGGGACTGAAGGATGAAGCACTTAAGTGTTATGATGATATAGAT
GAGGATTTTAACAATGATAGTTGTAGGAAATTTGTGGAAATGCTGTTGCTTGATGGCTGT
TTTGTGGTTGAATATATCCGTGAGTTCTGTAAAATGGTGCCGGAGGGAGAAGACAAAATT
ATCAAAGCGGCTTGGATGGAAGTTCTTGTAGATCGTGACTTGTTGCTACTAGAAAACCAA
CTCCCTTTTTTTATCCTCGCCAAACTTCATGAGATGACTACGGATCATGACGTCCCATTC
ATAGAGATGGTGAAATACAACTTTGCTACTAGTTTACCGAAGGTGACTCCTAAATTCATA
AGGGAAACTGATGGGAATGCCAAAGAAGTCAAACATTTACTTCAAGTAATACACATGTGT
TGTTGCCCTTCAGGAATGAATGCTAGCCTAACTGGGAATGCTAGCAATAAATTAAAACAT
GGCAAGAAAAGTTTTAACTGGCCTTCGCAACTAATTTGGACCAACAAAAAGCAACAAATT
GAGGAGGATGACGACATATGGCACGACCGCATGCGATGTGCAACAGAGCTTGAGGAAGCA
GGAATTAAATTTTCAAGAACTGGGAAAATTTATAGAAGGTTGAACAAGGACAACGAGGAG
GATTGTATAAGTTTATTTGATATCAAGTACGACAAGGAATTGATCGAAATTCCTTGTTTT
GAGGTGGTTGATAGTACGGAGACCGTTTTGAGAAATTTGATAGCTTACGAGCAACACTCT
ATTGGTGTACATCATAAATATTTCACAGATTATGTAATTCTTATGGATCGTCTAATCAAC
TCTGAAAAAGATGTGAAGTTGTTTCGCTTGAAGGGAATAATCAGAAACCGAATAGGCGAT
GACAATGAAGCAGCTAGCATCTTTAACAGACTTGGAGAAGGAGTGATCCCTTCAACTCAG
TTCTATTACAAAGAAGCATGCAAAAAGGTGGTTGAGCATTGTGAAAAACCATGTAGTGAA
AGGAAGGCAAGTTTTTGGCACAATTACTTTAATGGTCCTTGGGTGGGACTTTCAACTGCA
GCTGCAGTAATCCTCCTTTCGCTCACAGTTATGCAAACAGTATTAACTTTCATAAGTACT
CTTAAGTAG

Peptide Sequence

PEP ID

XP_016461728.1
PEP Infomation

PREDICTED: UPF0481 protein At3g47200-like [Nicotiana tabacum]
Sequence

MAQHIEITRLLDQTPPKDESPSRPQLLSPSPAVAASFFAFVVASHRARAIQEGREADYVI
EIKTADVQNPVFDEGLSTESCTIFKVNAGLHESNPNAYRPKLISIGPYHKNNPKLRSMEK
YKLRYRQRFLRRKKTIDLESCIRELEGLKDEALKCYDDIDEDFNNDSCRKFVEMLLLDGC
FVVEYIREFCKMVPEGEDKIIKAAWMEVLVDRDLLLLENQLPFFILAKLHEMTTDHDVPF
IEMVKYNFATSLPKVTPKFIRETDGNAKEVKHLLQVIHMCCCPSGMNASLTGNASNKLKH
GKKSFNWPSQLIWTNKKQQIEEDDDIWHDRMRCATELEEAGIKFSRTGKIYRRLNKDNEE
DCISLFDIKYDKELIEIPCFEVVDSTETVLRNLIAYEQHSIGVHHKYFTDYVILMDRLIN
SEKDVKLFRLKGIIRNRIGDDNEAASIFNRLGEGVIPSTQFYYKEACKKVVEHCEKPCSE
RKASFWHNYFNGPWVGLSTAAAVILLSLTVMQTVLTFISTLK

Transcript Sequence

Gene sequence data has not been registered.